mantispy.ds.jump_plate

mantispy.ds.jump_plate(cache_dir=None, **kwargs)

The images and segmentations behind one well of BR00121438.

Two fields of view of well O09, a compound that changed the cells without killing them: the eight channel images of each field, the CellProfiler outlines they were segmented with, and the plate’s load_data.csv. About 44 MB, and needs the spatial extra.

The cells measured from these fields are in jump_cells(), and the well-level profiles of the same plate in jump_target2().

Parameters:

• cache_dir (str | Path | None (default: None)) – Where to keep the download. Defaults to mantispy.settings.cache_dir.

• kwargs (Any) – Passed to mantispy.io.read_plate().

Return type:

SpatialData

Returns:

The well, with its fields as Images, the Nuclei, Cells and Cytoplasm segmentations as Labels, and the cells Table.

References

Chandrasekaran et al. [2023].