mantispy.pl.feature_distributions

mantispy.pl.feature_distributions(adata, features, groupby='Metadata_Plate', layer_before='raw', kind='ecdf')

Per-feature distributions, before and after normalization when layer_before exists.

Parameters:

• adata (AnnData) – Object holding the features to draw.

• features (Sequence[str]) – var_names to draw, one column of panels each.

• groupby (str (default: 'Metadata_Plate')) – obs column whose groups are drawn separately within each panel.

• layer_before (str | None (default: 'raw')) – Layer holding the values before normalization, or None to draw only the current ones. A layer that the object does not hold is skipped in the same way.

• kind (str (default: 'ecdf')) – "ecdf", "hist", or "ridge" for one offset filled density per group, which is easier to read with many groups.

Return type:

ndarray

Returns:

A 2-D array of axes with one row per layer shown and one column per feature.

Raises:

ValueError – kind is not one of the three accepted values.