mantispy.pp.standardize_feature_names

mantispy.pp.standardize_feature_names(adata, target='cp_measure', copy=False)

Rename features to target grammar, keeping the original in var.

CellProfiler feature names differ between versions, so renaming makes a dataset from an older pipeline comparable with one from a newer pipeline.

Parameters:

• adata (AnnData) – Object to rename.

• target (str (default: 'cp_measure')) – Naming grammar. Only "cp_measure" is supported.

• copy (bool (default: False)) – Return a modified copy instead of mutating in place.

Return type:

AnnData | None

Returns:

None, or the modified copy. Rewrites var_names and writes var["original_name"] on the first call, never overwriting it afterwards, so the incoming names survive repeated calls.

Raises:

ValueError – If target is not supported, or renaming would give two features the same name (for example two Zernike orders).