mantispy.ds.pooled_rare

mantispy.ds.pooled_rare(cache_dir=None, **kwargs)

Pooled rare variants, 290 barcodes in a pooled screen.

cpg0032-pooled-rare, aggregated to one row per barcode rather than per well, so there is no plate or well in obs.

Parameters:

• cache_dir (str | Path | None (default: None)) – Where to keep the download. Defaults to mantispy.settings.cache_dir.

• kwargs (Any) – Passed to mantispy.io.read_profiles().

Return type:

AnnData

Returns:

Barcodes by features.