Index A | B | C | D | E | F | G | H | I | J | L | M | N | O | P | Q | R | S | T | V | W A aggregate() (in module mantispy.tl) agnp() (in module mantispy.ds) amish() (in module mantispy.ds) annotate_controls() (in module mantispy.pp) annotate_jump() (in module mantispy.pp) B batch_variance() (in module mantispy.pl) batch_variance_explained() (in module mantispy.metrics) bbbc021() (in module mantispy.ds) blobs() (in module mantispy.ds) C cache_dir (mantispy.settings attribute) calculate_qc_metrics() (in module mantispy.pp) cell_counts() (in module mantispy.pl) cell_cycle() (in module mantispy.pl) cell_cycle_phase() (in module mantispy.tl) chroma() (in module mantispy.ds) cluster_composition() (in module mantispy.pl) (in module mantispy.tl) consensus() (in module mantispy.tl) control_drift() (in module mantispy.pl) controls() (in module mantispy.get) correct_plate_position() (in module mantispy.pp) cytotoxicity() (in module mantispy.pl) (in module mantispy.tl) D density() (in module mantispy.pl) diagnose_testing() (in module mantispy.metrics) differential_features() (in module mantispy.tl) distance_heatmap() (in module mantispy.pl) dose_response() (in module mantispy.pl) (in module mantispy.tl) downsample() (in module mantispy.pp) E edistance() (in module mantispy.tl) effect_size() (in module mantispy.tl) effect_sizes() (in module mantispy.pl) enrich() (in module mantispy.tl) enrich_hits() (in module mantispy.tl) evaluate_correction() (in module mantispy.metrics) F feature_batch_sensitivity() (in module mantispy.pp) feature_correlation() (in module mantispy.pl) feature_distributions() (in module mantispy.pl) feature_groups() (in module mantispy.pl) feature_reproducibility() (in module mantispy.pp) feature_select() (in module mantispy.pp) feature_select_chatterjee() (in module mantispy.pp) feature_sets() (in module mantispy.tl) feature_signature() (in module mantispy.pl) (in module mantispy.tl) feature_volcano() (in module mantispy.pl) features() (in module mantispy.get) filter_cells() (in module mantispy.pp) filter_features() (in module mantispy.pp) filter_images() (in module mantispy.pp) find_perturbation_key() (in module mantispy.pp) G gene_sets() (in module mantispy.tl) grit() (in module mantispy.tl) H harmony() (in module mantispy.pp) hit_calling() (in module mantispy.tl) hits() (in module mantispy.pl) I image_qc() (in module mantispy.pl) (in module mantispy.pp) J jump_cells() (in module mantispy.ds) jump_crispr() (in module mantispy.ds) jump_export() (in module mantispy.ds) jump_plate() (in module mantispy.ds) jump_target2() (in module mantispy.ds) L lisi() (in module mantispy.metrics) luad() (in module mantispy.ds) M mantispy.ds module mantispy.get module mantispy.io module mantispy.metrics module mantispy.pl module mantispy.pp module mantispy.tl module map() (in module mantispy.pl) (in module mantispy.tl) metrics() (in module mantispy.pl) miami() (in module mantispy.ds) moa_confusion() (in module mantispy.pl) moa_enrichment() (in module mantispy.pl) (in module mantispy.tl) module mantispy.ds mantispy.get mantispy.io mantispy.metrics mantispy.pl mantispy.pp mantispy.tl N nan_matrix() (in module mantispy.pl) neighbors_local_density() (in module mantispy.tl) neuropainting() (in module mantispy.ds) nn_moa_classify() (in module mantispy.tl) normalize() (in module mantispy.pp) O oasis_pilot() (in module mantispy.ds) obs_df() (in module mantispy.get) ok (mantispy._core.schema.ValidationReport property) outliers() (in module mantispy.pl) (in module mantispy.pp) override() (mantispy.settings method) P pathway_coherence() (in module mantispy.pl) (in module mantispy.tl) pc_regression() (in module mantispy.metrics) percent_replicating() (in module mantispy.tl) pki() (in module mantispy.ds) plate() (in module mantispy.pl) plate_effects() (in module mantispy.pl) pooled_rare() (in module mantispy.ds) Q qc() (in module mantispy.pl) R rank_features() (in module mantispy.tl) rank_int() (in module mantispy.pp) rank_sets() (in module mantispy.tl) read() (in module mantispy.io) read_jump() (in module mantispy.io) read_plate() (in module mantispy.io) read_profiles() (in module mantispy.io) regress_out() (in module mantispy.pp) replicate_correlation() (in module mantispy.pl) replicate_saturation() (in module mantispy.pl) (in module mantispy.tl) reset() (mantispy.settings method) rohban() (in module mantispy.ds) S sets_heatmap() (in module mantispy.pl) setting_agreement() (in module mantispy.pl) settings (in module mantispy) silhouette_batch() (in module mantispy.metrics) silhouette_label() (in module mantispy.metrics) similarity() (in module mantispy.pl) (in module mantispy.tl) sphere() (in module mantispy.pp) standardize_feature_names() (in module mantispy.pp) subpopulation_hits() (in module mantispy.pl) (in module mantispy.tl) subset_features() (in module mantispy.pp) synthetic_plate() (in module mantispy.ds) T to_dataframe() (in module mantispy.get) transport() (in module mantispy.pl) (in module mantispy.tl) V validate() (in module mantispy.io) ValidationReport (class in mantispy._core.schema) var_df() (in module mantispy.get) verbosity (mantispy.settings attribute) W wasserstein_features() (in module mantispy.tl) well_qc() (in module mantispy.pp) write() (in module mantispy.io)